Plan RAG update
Add workflow-level knowledge when introducing a new analysis workflow. Records should describe steps, required inputs, expected outputs, and recommended tools.
Docs
Install, configure, and extend BioMaster.
Start from the public repository, install dependencies, and update the knowledge bases when adding workflows or tools.
Quick start
Installation
The repository README recommends a Conda environment and the tracked requirements file.
git clone https://github.com/ai4nucleome/BioMaster.git cd BioMaster conda create -n agent python=3.12 conda activate agent pip install -r requirements.txt
Knowledge bases
Execute RAG update
Add tool-level knowledge when introducing scripts, command-line tools, parameters, installation notes, and troubleshooting guidance.
Useful links
| Resource | Link | Purpose |
|---|---|---|
| Source code | github.com/ai4nucleome/BioMaster | Main implementation, README, scripts, and examples. |
| Documentation | biomaster.readthedocs.io | Project documentation referenced by the README. |
| bioRxiv paper | 10.1101/2025.01.23.634608 | Manuscript abstract and citation entry. |
Linux has been tested for direct installation according to the project README. Windows and macOS compatibility should be verified before claiming support.